Transcript: SOX21-AS1:1

Basic information

LNCipedia transcript ID: SOX21-AS1:1 
LNCipedia gene ID: SOX21-AS1
Location (hg38): chr13:94712716-94715943
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2984 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021502; NONHSAT034741
Alternative gene names: XLOC_010472; linc-CLDN10-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.9007 non-coding 
CPAT coding probability 6.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOX21-AS1:1 no no no no

Available literature

  1. Lu (2017), A Novel Long Non-Coding RNA, SOX21-AS1, Indicates a Poor Prognosis and Promotes Lung Adenocarcinoma Proliferation., Cell. Physiol. Biochem.
  2. Yang (2016), Aberrant DNA hypermethylation-silenced SOX21-AS1 gene expression and its clinical importance in oral cancer., Clin Epigenetics
  3. Hezroni (2015), Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR180-1:1
3.1 lnc-GPR180-1:2
4.0 SOX21-AS1:1
4.1 SOX21-AS1:1
5.0 SOX21-AS1:1
5.1 SOX21-AS1:1
5.2 SOX21-AS1:1