Transcript: SOX5-AS1:10

Basic information

LNCipedia transcript ID: SOX5-AS1:10 
LNCipedia gene ID: SOX5-AS1
RefSeq ID: NR_120472
Location (hg38): chr12:24223271-24237965
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120472; NR_120472.1
Alternative gene names: LOC101928471


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -217.9342 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOX5-AS1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRMP-5:6
4.0 lnc-LRMP-5:6
4.1 lnc-LRMP-5:6
5.0 lnc-LRMP-5:6
5.1 SOX5-AS1:4
5.2 SOX5-AS1:10