Transcript: SOX5-AS1:11

Basic information

LNCipedia transcript ID: SOX5-AS1:11 
HGNC Gene Symbol: SOX5-AS1    
HGNC Full Gene Name: SOX5 antisense RNA 1
Ensembl Gene ID: ENSG00000256120
Ensembl Transcript ID: ENST00000539583
Location (hg38): chr12:24223287-24237965
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 573 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539583; ENST00000539583.1; RP11-778H2.1-002; OTTHUMT00000402103.1; NONHSAT027316
Alternative gene names: ENSG00000256120; RP11-778H2.1; ENSG00000256120.1; OTTHUMG00000169058.1; SOX5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.9342 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOX5-AS1:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRMP-3:2
3.1 lnc-LRMP-5:2
4.0 lnc-LRMP-5:2
4.1 lnc-LRMP-5:2
5.0 lnc-LRMP-5:2
5.1 SOX5-AS1:5
5.2 SOX5-AS1:11