Transcript: SP2-AS1:1

Basic information

LNCipedia transcript ID: SP2-AS1:1 
LNCipedia gene ID: SP2-AS1
Location (hg38): chr17:47898460-47941410
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1039 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000451140.1; AC003665.1-001; OTTHUMT00000255703.1; NONHSAT054345
Alternative gene names: ENSG00000234494.2; AC003665.1; OTTHUMG00000132519.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.2538 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SP2-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRR15L-5:1
4.0 SP2-AS1:1
4.1 SP2-AS1:1
5.0 SP2-AS1:1
5.1 SP2-AS1:1
5.2 SP2-AS1:1