Transcript: SP2-AS1:15

Basic information

LNCipedia transcript ID: SP2-AS1:15 
LNCipedia gene ID: SP2-AS1
Ensembl Gene ID: ENSG00000264920
Ensembl Transcript ID: ENST00000577279
Location (hg38): chr17:47891275-47895769
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 374 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577279.1; RP11-6N17.4-002; OTTHUMT00000441399.1
Alternative gene names: ENSG00000264920.1; RP11-6N17.4; OTTHUMG00000178293.1; ; AC018521.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.2213 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SP2-AS1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SP6-2:3
4.0 SP2-AS1:15
4.1 SP2-AS1:15
5.0 SP2-AS1:15
5.1 SP2-AS1:15
5.2 SP2-AS1:15