Transcript: SP2-AS1:16

Basic information

LNCipedia transcript ID: SP2-AS1:16 
LNCipedia gene ID: SP2-AS1
Location (hg38): chr17:47897330-47941392
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 408 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234494.3|ENST00000585280.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -395.831 non-coding 
CPAT coding probability 6.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SP2-AS1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SP2-AS1:16
5.0 SP2-AS1:16
5.1 SP2-AS1:16
5.2 SP2-AS1:16