Transcript: SP2-AS1:27

Basic information

LNCipedia transcript ID: SP2-AS1:27 
LNCipedia gene ID: SP2-AS1
Ensembl Gene ID: ENSG00000266821
Ensembl Transcript ID: ENST00000580282
Location (hg38): chr17:47879472-47882398
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2927 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580282.1; RP11-6N17.2-001; OTTHUMT00000441397.1; NONHSAT054337
Alternative gene names: ENSG00000266821.1; RP11-6N17.2; OTTHUMG00000178292.1; ; AC018521.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.4775 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SP2-AS1:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SP6-1:1
4.0 lnc-SP6-1:1
4.1 SP2-AS1:27
5.0 SP2-AS1:27
5.1 SP2-AS1:27
5.2 SP2-AS1:27