Transcript: SP2-AS1:4

Basic information

LNCipedia transcript ID: SP2-AS1:4 
LNCipedia gene ID: SP2-AS1
RefSeq ID: NR_103857
Location (hg38): chr17:47898386-47941404
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1096 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT054344; NR_103857; NR_103857.1
Alternative gene names: ; SP2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.2538 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SP2-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRR15L-5:6
4.0 SP2-AS1:4
4.1 SP2-AS1:4
5.0 SP2-AS1:4
5.1 SP2-AS1:4
5.2 SP2-AS1:4