Transcript: SP2-AS1:6

Basic information

LNCipedia transcript ID: SP2-AS1:6 
HGNC Gene Symbol: SP2-AS1    
HGNC Full Gene Name: SP2 antisense RNA 1
Ensembl Gene ID: ENSG00000234494
Ensembl Transcript ID: ENST00000585280
Location (hg38): chr17:47897330-47941389
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 405 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000585280.1; AC003665.1-004; OTTHUMT00000441401.1; NONHSAT054342; ENST00000585280.5
Alternative gene names: ENSG00000234494.2; AC003665.1; OTTHUMG00000132519.2; ENSG00000234494.3; ENSG00000234494.7; SP2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -395.831 non-coding 
CPAT coding probability 10.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SP2-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRR15L-5:3
4.0 SP2-AS1:6
4.1 SP2-AS1:6
5.0 SP2-AS1:6
5.1 SP2-AS1:6
5.2 SP2-AS1:6