Transcript: SP2-AS1:7

Basic information

LNCipedia transcript ID: SP2-AS1:7 
HGNC Gene Symbol: SP2-AS1    
HGNC Full Gene Name: SP2 antisense RNA 1
Ensembl Gene ID: ENSG00000234494
Ensembl Transcript ID: ENST00000411573
Location (hg38): chr17:47898785-47941359
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1738 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411573.2; AC003665.1-003; OTTHUMT00000255705.2; ENST00000411573.6
Alternative gene names: ENSG00000234494.2; AC003665.1; OTTHUMG00000132519.2; ENSG00000234494.3; ENSG00000234494.7; SP2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.8418 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SP2-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRR15L-5:4
4.0 SP2-AS1:7
4.1 SP2-AS1:7
5.0 SP2-AS1:7
5.1 SP2-AS1:7
5.2 SP2-AS1:7