Transcript: SPACA6P-AS:1

Basic information

LNCipedia transcript ID: SPACA6P-AS:1 
HGNC Gene Symbol: SPACA6P-AS    
HGNC Full Gene Name: SPACA6P antisense RNA
Ensembl Gene ID: ENSG00000269959
Ensembl Transcript ID: ENST00000602324
RefSeq ID: NR_108100
Location (hg38): chr19:51685363-51693456
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3962 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000503177; NONHSAT067460; NR_108100; ENST00000602324.1; NR_108100.1
Alternative gene names: ENSG00000251384; AC018755.2; ENSG00000269959.1; SPACA6P-AS;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.9041 non-coding 
CPAT coding probability 18.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPACA6P-AS:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAS1-1:1
3.1 lnc-HAS1-1:1
4.0 SPACA6P-AS:1
4.1 SPACA6P-AS:1
5.0 SPACA6P-AS:1
5.1 SPACA6P-AS:1
5.2 SPACA6P-AS:1