Transcript: SPAG5-AS1:3

Basic information

LNCipedia transcript ID: SPAG5-AS1:3 
HGNC Gene Symbol: SPAG5-AS1    
HGNC Full Gene Name: SPAG5 antisense RNA 1
Ensembl Gene ID: ENSG00000227543
Ensembl Transcript ID: ENST00000556050
Location (hg38): chr17:28599133-28606910
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 871 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556050.1; SPAG5-AS1-004; OTTHUMT00000411485.1; NONHSAT052592
Alternative gene names: ENSG00000227543.3; SPAG5-AS1; OTTHUMG00000132827.3; ENSG00000227543.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.0043 non-coding 
CPAT coding probability 2.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPAG5-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUPT6H-2:2
4.0 SPAG5-AS1:3
4.1 SPAG5-AS1:3
5.0 SPAG5-AS1:3
5.1 SPAG5-AS1:3
5.2 SPAG5-AS1:3