Transcript: SPANXA2-OT1:4

Basic information

LNCipedia transcript ID: SPANXA2-OT1:4 
HGNC Gene Symbol: SPANXA2-OT1    
HGNC Full Gene Name: SPANXA2 overlapping transcript 1
Ensembl Gene ID: ENSG00000277215
Ensembl Transcript ID: ENST00000622372
Location (hg38): chrX:141502849-141649927
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1686 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622372.1
Alternative gene names: ENSG00000277215.1; SPANXA2-OT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 130.3679 coding 
CPAT coding probability 47.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SPANXA2-OT1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 SPANXA2-OT1:4
5.1 SPANXA2-OT1:4
5.2 SPANXA2-OT1:4