Transcript: SPART-AS1:9

Basic information

LNCipedia transcript ID: SPART-AS1:9 
HGNC Gene Symbol: SPART-AS1    
HGNC Full Gene Name: SPART antisense RNA 1
Ensembl Gene ID: ENSG00000120664
Ensembl Transcript ID: ENST00000488319
Location (hg38): chr13:36346431-36369601
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 556 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000488319.5
Alternative gene names: ENSG00000120664.10; SPG20-AS1; ; SPART-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.6332 non-coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPART-AS1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SPG20-AS1:3
4.1 SPG20-AS1:3
5.0 SPG20-AS1:3
5.1 SPART-AS1:4
5.2 SPART-AS1:9