Transcript: SPATA17-AS1:2

Basic information

LNCipedia transcript ID: SPATA17-AS1:2 
HGNC Gene Symbol: SPATA17-AS1    
HGNC Full Gene Name: SPATA17 antisense RNA 1
Ensembl Gene ID: ENSG00000234070
Ensembl Transcript ID: ENST00000415765
RefSeq ID: NR_125784
Location (hg38): chr1:217781198-217785120
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 420 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000415765.1; RP11-415L24.1-001; OTTHUMT00000092918.1; NONHSAT009504; NR_125784; NR_125784.1
Alternative gene names: ENSG00000234070.1; RP11-415L24.1; OTTHUMG00000038051.1; SPATA17-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.3059 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA17-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPATCH2-1:1
4.0 SPATA17-AS1:2
4.1 SPATA17-AS1:2
5.0 SPATA17-AS1:2
5.1 SPATA17-AS1:2
5.2 SPATA17-AS1:2