Transcript: SPATA41:12

Basic information

LNCipedia transcript ID: SPATA41:12 
LNCipedia gene ID: SPATA41
Location (hg38): chr15:100342543-100350766
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4549 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000189419.5|ENCT00000152959.1
Alternative gene names: FLJ42289; HSD47


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.8974 non-coding 
CPAT coding probability 98.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SPATA41:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SPATA41:12
5.0 SPATA41:12
5.1 SPATA41:12
5.2 SPATA41:12