Transcript: SPATA41:4

Basic information

LNCipedia transcript ID: SPATA41:4 
LNCipedia gene ID: SPATA41
Location (hg38): chr15:100348929-100350154
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 479 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023833; NONHSAT051094
Alternative gene names: XLOC_011609; linc-ADAMTS17; FLJ42289; HSD47


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.5548 non-coding 
CPAT coding probability 34.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA41:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS17-1:3
3.1 lnc-ADAMTS17-1:4
4.0 SPATA41:4
4.1 SPATA41:4
5.0 SPATA41:4
5.1 SPATA41:4
5.2 SPATA41:4