Transcript: SPATA41:6

Basic information

LNCipedia transcript ID: SPATA41:6 
LNCipedia gene ID: SPATA41
Location (hg38): chr15:100349033-100349696
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023834; NONHSAT051097
Alternative gene names: XLOC_011609; linc-ADAMTS17; FLJ42289; HSD47


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -371.2169 non-coding 
CPAT coding probability 51.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SPATA41:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS17-1:5
3.1 lnc-ADAMTS17-1:6
4.0 SPATA41:6
4.1 SPATA41:6
5.0 SPATA41:6
5.1 SPATA41:6
5.2 SPATA41:6