Transcript: SPINT1-AS1:17

Basic information

LNCipedia transcript ID: SPINT1-AS1:17 
LNCipedia gene ID: SPINT1-AS1
Location (hg38): chr15:40836047-40844506
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 708 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA464:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -12.6289 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPINT1-AS1:17 no no no no

Available literature

  1. Wang (2017), Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PPP1R14D-1:6
4.1 lnc-PPP1R14D-1:6
5.0 lnc-PPP1R14D-1:6
5.1 SPINT1-AS1:2
5.2 SPINT1-AS1:17