Transcript: SPON1-AS1:3

Basic information

LNCipedia transcript ID: SPON1-AS1:3 
HGNC Gene Symbol: SPON1-AS1    
HGNC Full Gene Name: SPON1 antisense RNA 1
Ensembl Gene ID: ENSG00000254418
Ensembl Transcript ID: ENST00000534587
Location (hg38): chr11:14262846-14273691
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 240 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534587.1; RP11-21L19.1-001; OTTHUMT00000386031.1; NONHSAT018122
Alternative gene names: ENSG00000254418.1; RP11-21L19.1; OTTHUMG00000165755.1; SPON1-AS1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPON1-AS1:3 yes no no no

Available literature

  1. Zhou (2017), Discovery and validation of immune-associated long non-coding RNA biomarkers associated with clinically molecular subtype and prognosis in diffuse large B cell lymphoma., Mol. Cancer

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RRAS2-1:1
4.0 lnc-RRAS2-1:1
4.1 lnc-RRAS2-1:1
5.0 lnc-RRAS2-1:1
5.1 SPON1-AS1:2
5.2 SPON1-AS1:3