Transcript: SREBF2-AS1:5

Basic information

LNCipedia transcript ID: SREBF2-AS1:5 
HGNC Gene Symbol: SREBF2-AS1    
HGNC Full Gene Name: SREBF2 antisense RNA 1
Ensembl Gene ID: ENSG00000184068
Ensembl Transcript ID: ENST00000333487
Location (hg38): chr22:41831215-41834665
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2989 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000333487; ENST00000333487.2; RP5-821D11.7-001; OTTHUMT00000322047.1; NONHSAT086984
Alternative gene names: ENSG00000184068; RP5-821D11.7; ENSG00000184068.2; OTTHUMG00000151272.1; AL021453.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.382 non-coding 
CPAT coding probability 21.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SREBF2-AS1:5 yes no no no

Available literature

  1. Luo (2018), Long non-coding RNAs RP5-821D11.7, APCDD1L-AS1 and RP11-277P12.9 were associated with the prognosis of lung squamous cell carcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHISA8-1:1
3.1 lnc-SHISA8-1:1
4.0 lnc-SHISA8-1:1
4.1 lnc-SHISA8-1:1
5.0 lnc-SHISA8-1:1
5.1 SREBF2-AS1:2
5.2 SREBF2-AS1:5