Transcript: SRGAP3-AS4:4

Basic information

LNCipedia transcript ID: SRGAP3-AS4:4 
LNCipedia gene ID: SRGAP3-AS4
Location (hg38): chr3:9249792-9256943
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 215 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005944; NONHSAT087754
Alternative gene names: XLOC_002573; linc-THUMPD3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRGAP3-AS4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THUMPD3-1:3
3.1 lnc-THUMPD3-1:3
4.0 SRGAP3-AS4:4
4.1 SRGAP3-AS4:4
5.0 SRGAP3-AS4:4
5.1 SRGAP3-AS4:4
5.2 SRGAP3-AS4:4