Transcript: SRP14-AS1:6

Basic information

LNCipedia transcript ID: SRP14-AS1:6 
HGNC Gene Symbol: SRP14-AS1    
HGNC Full Gene Name: SRP14 antisense RNA1 (head to head)
Ensembl Gene ID: ENSG00000248508
Ensembl Transcript ID: ENST00000504245
Location (hg38): chr15:40039311-40067290
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2317 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504245; TCONS_00023221; ENST00000504245.1; RP11-521C20.4-001; OTTHUMT00000418269.1; ENST00000504245.5
Alternative gene names: ENSG00000248508; XLOC_011219; linc-BUB1B; AC021755.4; ENSG00000248508.2; RP11-521C20.4; OTTHUMG00000172392.1; SRP14-AS1; ENSG00000248508.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.0852 non-coding 
CPAT coding probability 5.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRP14-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2AK4-2:4
3.1 lnc-EIF2AK4-2:4
4.0 SRP14-AS1:6
4.1 SRP14-AS1:6
5.0 SRP14-AS1:6
5.1 SRP14-AS1:6
5.2 SRP14-AS1:6