Transcript: SSSCA1-AS1:4

Basic information

LNCipedia transcript ID: SSSCA1-AS1:4 
HGNC Gene Symbol: SSSCA1-AS1    
HGNC Full Gene Name: SSSCA1 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000260233
Ensembl Transcript ID: ENST00000567594
Location (hg38): chr11:65569660-65570273
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 614 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567594.1; RP11-856B14.1-001; OTTHUMT00000389510.2; NONHSAT022170
Alternative gene names: ENSG00000260233.1; RP11-856B14.1; OTTHUMG00000166387.2; ENSG00000260233.2; SSSCA1-AS1; ENSG00000260233.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -524.1721 non-coding 
CPAT coding probability 35.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SSSCA1-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LTBP3-1:2
4.0 SSSCA1-AS1:4
4.1 SSSCA1-AS1:4
5.0 SSSCA1-AS1:4
5.1 SSSCA1-AS1:4
5.2 SSSCA1-AS1:4