Transcript: SSTR5-AS1:5

Basic information

LNCipedia transcript ID: SSTR5-AS1:5 
HGNC Gene Symbol: SSTR5-AS1    
HGNC Full Gene Name: SSTR5 antisense RNA 1
Ensembl Gene ID: ENSG00000261713
Ensembl Transcript ID: ENST00000565992
Location (hg38): chr16:1066248-1073603
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565992.1; RP11-161M6.4-004; OTTHUMT00000420784.1; NONHSAT051914
Alternative gene names: ENSG00000261713.1; RP11-161M6.4; OTTHUMG00000172831.1; ENSG00000261713.2; SSTR5-AS1; ENSG00000261713.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.2883 non-coding 
CPAT coding probability 20.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SSTR5-AS1:5 no no no no

Available literature

  1. Ramnarine (2018), The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications., Gigascience


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QTNF8-1:4
4.0 SSTR5-AS1:5
4.1 SSTR5-AS1:5
5.0 SSTR5-AS1:5
5.1 SSTR5-AS1:5
5.2 SSTR5-AS1:5