Transcript: ST3GAL5-AS1:17

Basic information

LNCipedia transcript ID: ST3GAL5-AS1:17 
LNCipedia gene ID: ST3GAL5-AS1
Ensembl Gene ID: ENSG00000272564
Ensembl Transcript ID: ENST00000608140
Location (hg38): chr2:85904279-85904727
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 449 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608140.1
Alternative gene names: ENSG00000272564.1; RP11-548P2.2; ; AC012511.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST3GAL5-AS1:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATOH8-2:16
4.0 ST3GAL5-AS1:17
4.1 ST3GAL5-AS1:17
5.0 ST3GAL5-AS1:17
5.1 ST3GAL5-AS1:17
5.2 ST3GAL5-AS1:17