Transcript: ST3GAL5-AS1:7

Basic information

LNCipedia transcript ID: ST3GAL5-AS1:7 
HGNC Gene Symbol: ST3GAL5-AS1    
HGNC Full Gene Name: ST3GAL5 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000232504
Ensembl Transcript ID: ENST00000455121
Location (hg38): chr2:85889280-85890980
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 783 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455121; ENST00000455121.3; AC105053.4-003; OTTHUMT00000388864.1; NONHSAT072066
Alternative gene names: ENSG00000232504; AC105053.4; ENSG00000232504.3; OTTHUMG00000153169.4; ENSG00000232504.4; ST3GAL5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -536.5928 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST3GAL5-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATOH8-1:5
3.1 lnc-ATOH8-2:6
4.0 ST3GAL5-AS1:7
4.1 ST3GAL5-AS1:7
5.0 ST3GAL5-AS1:7
5.1 ST3GAL5-AS1:7
5.2 ST3GAL5-AS1:7