Transcript: ST3GAL6-AS1:4

Basic information

LNCipedia transcript ID: ST3GAL6-AS1:4 
HGNC Gene Symbol: ST3GAL6-AS1    
HGNC Full Gene Name: ST3GAL6 antisense RNA 1
Ensembl Gene ID: ENSG00000239445
Ensembl Transcript ID: ENST00000475816
Location (hg38): chr3:98714332-98732508
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 524 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000475816.1; ST3GAL6-AS1-001; OTTHUMT00000353003.1; NONHSAT090812; ENST00000475816.5
Alternative gene names: ENSG00000239445.1; ST3GAL6-AS1; OTTHUMG00000159044.1; ENSG00000239445.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.8255 non-coding 
CPAT coding probability 8.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST3GAL6-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCBLD2-1:3
4.0 ST3GAL6-AS1:4
4.1 ST3GAL6-AS1:4
5.0 ST3GAL6-AS1:4
5.1 ST3GAL6-AS1:4
5.2 ST3GAL6-AS1:4