Transcript: ST7-AS1:4

Basic information

LNCipedia transcript ID: ST7-AS1:4 
LNCipedia gene ID: ST7-AS1
Location (hg38): chr7:116943639-116954286
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3946 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227199.1|MICT00000331729.1
Alternative gene names: ST7AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.9757 non-coding 
CPAT coding probability 20.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST7-AS1:4 yes no no no

Available literature

  1. Vincent (2002), The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 ST7-AS1:4
5.0 ST7-AS1:4
5.1 ST7-AS1:4
5.2 ST7-AS1:4