Transcript: ST7-AS1:5

Basic information

LNCipedia transcript ID: ST7-AS1:5 
LNCipedia gene ID: ST7-AS1
Location (hg38): chr7:116952446-116954286
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1841 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227199.1|ENST00000456775.1
Alternative gene names: ST7AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -89.1431 non-coding 
CPAT coding probability 22.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST7-AS1:5 yes no no no

Available literature

  1. Vincent (2002), The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 ST7-AS1:5
5.0 ST7-AS1:5
5.1 ST7-AS1:5
5.2 ST7-AS1:5