Transcript: ST8SIA6-AS1:2

Basic information

LNCipedia transcript ID: ST8SIA6-AS1:2 
HGNC Gene Symbol: ST8SIA6-AS1    
HGNC Full Gene Name: ST8SIA6 antisense RNA 1
Ensembl Gene ID: ENSG00000204832
Ensembl Transcript ID: ENST00000457649
RefSeq ID: NR_034129
Location (hg38): chr10:17386936-17408286
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 557 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000457649.2; RP11-414K1.3-001; OTTHUMT00000047033.2; NONHSAT011616; NR_034129; ENST00000457649.6; NR_034129.1
Alternative gene names: ENSG00000204832.5; RP11-414K1.3; OTTHUMG00000017746.2; ST8SIA6-AS1; ENSG00000204832.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.2276 non-coding 
CPAT coding probability 8.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST8SIA6-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VIM-1:1
4.0 ST8SIA6-AS1:2
4.1 ST8SIA6-AS1:2
5.0 ST8SIA6-AS1:2
5.1 ST8SIA6-AS1:2
5.2 ST8SIA6-AS1:2