Transcript: ST8SIA6-AS1:6

Basic information

LNCipedia transcript ID: ST8SIA6-AS1:6 
LNCipedia gene ID: ST8SIA6-AS1
Location (hg38): chr10:17399102-17410631
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1689 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000511755.2; RP11-414K1.3-201; NONHSAT011617
Alternative gene names: ENSG00000204832.5; RP11-414K1.3; OTTHUMG00000017746.2; ST8SIA6-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.9538 non-coding 
CPAT coding probability 18.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST8SIA6-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VIM-1:4
4.0 ST8SIA6-AS1:6
4.1 ST8SIA6-AS1:6
5.0 ST8SIA6-AS1:6
5.1 ST8SIA6-AS1:6
5.2 ST8SIA6-AS1:6