Transcript: STAM-AS1:1

Basic information

LNCipedia transcript ID: STAM-AS1:1 
LNCipedia gene ID: STAM-AS1
RefSeq ID: NR_110370
Location (hg38): chr10:17641284-17643918
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2635 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110370; NR_110370.1
Alternative gene names: locus3182; STAM-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.2996 non-coding 
CPAT coding probability 23.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STAM-AS1:1 no no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPLA-1:2
4.0 STAM-AS1:1
4.1 STAM-AS1:1
5.0 STAM-AS1:1
5.1 STAM-AS1:1
5.2 STAM-AS1:1