Transcript: STAM-AS1:2

Basic information

LNCipedia transcript ID: STAM-AS1:2 
HGNC Gene Symbol: STAM-AS1    
HGNC Full Gene Name: STAM antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000260589
Ensembl Transcript ID: ENST00000563601
Location (hg38): chr10:17641284-17643878
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2595 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563601.1; RP11-390B4.5-001; OTTHUMT00000431556.1; NONHSAT011627
Alternative gene names: ENSG00000260589.1; RP11-390B4.5; OTTHUMG00000176135.1; STAM-AS1; locus3182


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.2996 non-coding 
CPAT coding probability 23.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STAM-AS1:2 no no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPLA-1:1
4.0 STAM-AS1:2
4.1 STAM-AS1:2
5.0 STAM-AS1:2
5.1 STAM-AS1:2
5.2 STAM-AS1:2