Transcript: STK32A-AS1:16

Basic information

LNCipedia transcript ID: STK32A-AS1:16 
HGNC Gene Symbol: STK32A-AS1    
HGNC Full Gene Name: STK32A antisense RNA 1
Ensembl Gene ID: ENSG00000250343
Ensembl Transcript ID: ENST00000504297
Location (hg38): chr5:147180204-147234859
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 863 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009801; ENST00000504297.1; CTC-255N20.1-001; OTTHUMT00000373236.1; NONHSAT104419
Alternative gene names: XLOC_005047; linc-PPP2R2B-1; ENSG00000250343.1; CTC-255N20.1; OTTHUMG00000163410.1; STK32A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.8007 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STK32A-AS1:16 no no no no

Available literature

  1. Wang (2017), Long non-coding RNA CTA sensitizes osteosarcoma cells to doxorubicin through inhibition of autophagy., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP2R2B-2:1
3.1 lnc-PPP2R2B-2:1
4.0 lnc-PPP2R2B-2:1
4.1 lnc-PPP2R2B-2:1
5.0 lnc-PPP2R2B-2:1
5.1 STK32A-AS1:7
5.2 STK32A-AS1:16