Transcript: STK32A-AS1:19

Basic information

LNCipedia transcript ID: STK32A-AS1:19 
LNCipedia gene ID: STK32A-AS1
Location (hg38): chr5:147177051-147179923
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010526; NONHSAT104418
Alternative gene names: XLOC_005046; linc-PPP2R2B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.7331 non-coding 
CPAT coding probability 30.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STK32A-AS1:19 no no no no

Available literature

  1. Wang (2017), Long non-coding RNA CTA sensitizes osteosarcoma cells to doxorubicin through inhibition of autophagy., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP2R2B-1:1
3.1 lnc-PPP2R2B-1:1
4.0 lnc-PPP2R2B-1:1
4.1 lnc-PPP2R2B-2:9
5.0 lnc-PPP2R2B-2:9
5.1 STK32A-AS1:10
5.2 STK32A-AS1:19