Transcript: STX18-AS1:15

Basic information

LNCipedia transcript ID: STX18-AS1:15 
LNCipedia gene ID: STX18-AS1
Location (hg38): chr4:4542141-4788074
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1029 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000247708.3|FTMT21500051293.1
Alternative gene names: LOC100507266


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.7758 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STX18-AS1:15 yes no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Cordell (2013), Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 STX18-AS1:15
5.0 STX18-AS1:15
5.1 STX18-AS1:15
5.2 STX18-AS1:15