Transcript: STX18-AS1:21

Basic information

LNCipedia transcript ID: STX18-AS1:21 
LNCipedia gene ID: STX18-AS1
Location (hg38): chr4:4565863-4566870
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1008 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT094944
Alternative gene names: LOC100507266


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.0053 non-coding 
CPAT coding probability 3.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STX18-AS1:21 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Cordell (2013), Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NSG1.1-2:1
4.0 lnc-NSG1.1-2:1
4.1 STX18-AS1:21
5.0 STX18-AS1:21
5.1 STX18-AS1:21
5.2 STX18-AS1:21