Transcript: STX18-AS1:7

Basic information

LNCipedia transcript ID: STX18-AS1:7 
HGNC Gene Symbol: STX18-AS1    
HGNC Full Gene Name: STX18 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000247708
Ensembl Transcript ID: ENST00000502693
Location (hg38): chr4:4542240-4637904
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 724 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502693; ENST00000502693.1; RP11-323F5.2-003; OTTHUMT00000358303.1; NONHSAT094937
Alternative gene names: ENSG00000247708; RP11-323F5.2; ENSG00000247708.2; OTTHUMG00000159923.1; ENSG00000247708.3; STX18-AS1; ENSG00000247708.7; LOC100507266


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.899 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STX18-AS1:7 yes no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Cordell (2013), Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NSG1.1-1:4
3.1 lnc-NSG1.1-1:4
4.0 STX18-AS1:7
4.1 STX18-AS1:7
5.0 STX18-AS1:7
5.1 STX18-AS1:7
5.2 STX18-AS1:7