Transcript: STX18-AS1:8

Basic information

LNCipedia transcript ID: STX18-AS1:8 
HGNC Gene Symbol: STX18-AS1    
HGNC Full Gene Name: STX18 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000247708
Ensembl Transcript ID: ENST00000514763
Location (hg38): chr4:4542418-4545060
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 531 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514763; ENST00000514763.1; RP11-323F5.2-005; OTTHUMT00000358305.1
Alternative gene names: ENSG00000247708; RP11-323F5.2; ENSG00000247708.2; OTTHUMG00000159923.1; ENSG00000247708.3; STX18-AS1; ENSG00000247708.7; LOC100507266


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.0383 non-coding 
CPAT coding probability 4.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STX18-AS1:8 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Cordell (2013), Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NSG1.1-1:5
3.1 lnc-NSG1.1-1:5
4.0 STX18-AS1:8
4.1 STX18-AS1:8
5.0 STX18-AS1:8
5.1 STX18-AS1:8
5.2 STX18-AS1:8