Transcript: STXBP5-AS1:2

Basic information

LNCipedia transcript ID: STXBP5-AS1:2 
LNCipedia gene ID: STXBP5-AS1
Location (hg38): chr6:146841389-147204614
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3072 bp
Exons: 11
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT115433; NR_034115
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.6819 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STXBP5-AS1:2 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  2. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHPRH-2:9
4.0 STXBP5-AS1:2
4.1 STXBP5-AS1:2
5.0 STXBP5-AS1:2
5.1 STXBP5-AS1:2
5.2 STXBP5-AS1:2