Transcript: SYNGAP1-AS1:10

Basic information

LNCipedia transcript ID: SYNGAP1-AS1:10 
HGNC Gene Symbol: SYNGAP1-AS1    
HGNC Full Gene Name: SYNGAP1 antisense RNA 1
Ensembl Gene ID: ENSG00000274259
Ensembl Transcript ID: ENST00000614205
Location (hg38): chr6:33453987-33454408
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 422 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000614205.1
Alternative gene names: ENSG00000274259.2; XXbac-BPG294E21.9; AL662799.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1069.6017 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SYNGAP1-AS1:10 no no no no

Available literature

  1. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CUTA-1:3
4.1 lnc-CUTA-1:3
5.0 lnc-CUTA-1:3
5.1 SYNGAP1-AS1:4
5.2 SYNGAP1-AS1:10