Transcript: SYNGAP1-AS1:11

Basic information

LNCipedia transcript ID: SYNGAP1-AS1:11 
LNCipedia gene ID: SYNGAP1-AS1
Location (hg38): chr6:33436836-33454405
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 782 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000088099.1|MICT00000301952.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.037 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SYNGAP1-AS1:11 no no no no

Available literature

  1. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CUTA-1:5
5.0 lnc-CUTA-1:5
5.1 SYNGAP1-AS1:5
5.2 SYNGAP1-AS1:11