Transcript: SYNGAP1-AS1:12

Basic information

LNCipedia transcript ID: SYNGAP1-AS1:12 
LNCipedia gene ID: SYNGAP1-AS1
Location (hg38): chr6:33453841-33454405
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 565 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000088099.1|FTMT22200003016.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1069.6017 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SYNGAP1-AS1:12 no no no no

Available literature

  1. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CUTA-1:6
5.0 lnc-CUTA-1:6
5.1 SYNGAP1-AS1:6
5.2 SYNGAP1-AS1:12