Transcript: TAF1A-AS1:3

Basic information

LNCipedia transcript ID: TAF1A-AS1:3 
HGNC Gene Symbol: TAF1A-AS1    
HGNC Full Gene Name: TAF1A antisense RNA 1
Ensembl Gene ID: ENSG00000225265
Ensembl Transcript ID: ENST00000427540
Location (hg38): chr1:222589931-222592733
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 750 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000396; ENST00000427540.1; RP11-378J18.3-002; OTTHUMT00000091487.1; NONHSAT009689
Alternative gene names: XLOC_000576; linc-MIA3-1; ENSG00000225265.1; RP11-378J18.3; OTTHUMG00000037542.1; TAF1A-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.2198 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TAF1A-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MIA3-1:1
3.1 lnc-MIA3-2:2
4.0 TAF1A-AS1:3
4.1 TAF1A-AS1:3
5.0 TAF1A-AS1:3
5.1 TAF1A-AS1:3
5.2 TAF1A-AS1:3