Transcript: TAPT1-AS1:1

Basic information

LNCipedia transcript ID: TAPT1-AS1:1 
LNCipedia gene ID: TAPT1-AS1
RefSeq ID: NR_027696
Location (hg38): chr4:16226663-16258187
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2547 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000440429; NONHSAT095672; NR_027696; NR_027696.1
Alternative gene names: ENSG00000225917; AC006427.1; FLJ39653; TAPT1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.599 non-coding 
CPAT coding probability 59.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TAPT1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD38-1:1
3.1 lnc-CD38-2:1
4.0 TAPT1-AS1:1
4.1 TAPT1-AS1:1
5.0 TAPT1-AS1:1
5.1 TAPT1-AS1:1
5.2 TAPT1-AS1:1