Transcript: TAPT1-AS1:10

Basic information

LNCipedia transcript ID: TAPT1-AS1:10 
LNCipedia gene ID: TAPT1-AS1
Location (hg38): chr4:16320099-16355742
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 345 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008003; NONHSAT095685
Alternative gene names: XLOC_003469; linc-CLRN2-3; FLJ39653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -428.0854 non-coding 
CPAT coding probability 7.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TAPT1-AS1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD38-3:1
3.1 lnc-CD38-2:6
4.0 TAPT1-AS1:10
4.1 TAPT1-AS1:10
5.0 TAPT1-AS1:10
5.1 TAPT1-AS1:10
5.2 TAPT1-AS1:10