Transcript: TAPT1-AS1:2

Basic information

LNCipedia transcript ID: TAPT1-AS1:2 
LNCipedia gene ID: TAPT1-AS1
Location (hg38): chr4:16226663-16228584
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1922 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT095673; ENST00000598538.1
Alternative gene names: ENSG00000263327.2; TAPT1-AS1; FLJ39653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.0108 non-coding 
CPAT coding probability 97.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TAPT1-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD38-2:7
4.0 TAPT1-AS1:2
4.1 TAPT1-AS1:2
5.0 TAPT1-AS1:2
5.1 TAPT1-AS1:2
5.2 TAPT1-AS1:2