Transcript: TAPT1-AS1:3

Basic information

LNCipedia transcript ID: TAPT1-AS1:3 
LNCipedia gene ID: TAPT1-AS1
RefSeq ID: NR_027697
Location (hg38): chr4:16226663-16258187
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2496 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT095674; NR_027697; NR_027697.1
Alternative gene names: FLJ39653; TAPT1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.599 non-coding 
CPAT coding probability 59.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TAPT1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD38-2:8
4.0 TAPT1-AS1:3
4.1 TAPT1-AS1:3
5.0 TAPT1-AS1:3
5.1 TAPT1-AS1:3
5.2 TAPT1-AS1:3