Transcript: TAPT1-AS1:4

Basic information

LNCipedia transcript ID: TAPT1-AS1:4 
HGNC Gene Symbol: TAPT1-AS1    
HGNC Full Gene Name: TAPT1 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000263327
Ensembl Transcript ID: ENST00000573308
Location (hg38): chr4:16226685-16256744
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1031 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573308.1; RP11-783N5.1-003; OTTHUMT00000439457.1; ENST00000573308.5
Alternative gene names: ENSG00000263327.1; RP11-783N5.1; OTTHUMG00000160321.2; ENSG00000263327.2; TAPT1-AS1; ENSG00000263327.6; FLJ39653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.599 non-coding 
CPAT coding probability 61.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TAPT1-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD38-2:2
4.0 TAPT1-AS1:4
4.1 TAPT1-AS1:4
5.0 TAPT1-AS1:4
5.1 TAPT1-AS1:4
5.2 TAPT1-AS1:4